M

Micro-Manager 1.1

Nico Stuurman – Open Source

Micro-Manager: Revolutionizing Microscopy Control

Pete Milner

Micro-Manager is an open-source software platform that simplifies the management and automation of microscope hardware, enhancing research capabilities in biological imaging.
2025 Editor's Rating

Micro-Manager is a powerful open-source software application designed by Nico Stuurman for controlling various microscopy devices. This versatile tool provides users with a flexible solution for managing and automating scientific imaging experiments.

One of the key features of Micro-Manager is its extensive device support, allowing seamless integration with a wide range of microscopes, cameras, stages, filter wheels, and other hardware components. This compatibility makes it a valuable asset for researchers working with different imaging systems.

With Micro-Manager, users can easily control and customize their microscopy setup according to specific experimental requirements. The intuitive interface enables efficient configuration of imaging parameters, such as exposure time, image resolution, illumination settings, and more.

For advanced imaging needs, Micro-Manager offers automation capabilities through scripting using popular programming languages like Python and JavaScript. This feature empowers users to automate repetitive tasks, create complex imaging sequences, and enhance productivity in the laboratory.

In addition to its automation features, Micro-Manager provides powerful tools for real-time image analysis and processing. Users can perform tasks such as image stitching, fluorescence quantification, colocalization analysis, and multi-dimensional image reconstruction within the software environment.

Furthermore, Micro-Manager supports multi-dimensional acquisition, allowing users to capture images in 3D volumes, time series, z-stacks, and more. This capability is essential for dynamic live-cell imaging experiments, high-content screening applications, and other time-lapse microscopy studies.

The software also offers plugin support, enabling users to extend its functionality with additional features and tools developed by the microscopy community. This collaborative approach enhances the versatility of Micro-Manager and allows users to tailor the software to their specific research needs.

Micro-Manager by Nico Stuurman is a comprehensive tool for controlling microscopy devices, automating imaging workflows, analyzing images, and acquiring multi-dimensional data. Its user-friendly interface, extensive device support, scripting capabilities, and plugin system make it a valuable asset for researchers and scientists in the field of microscopy.

Overview

Micro-Manager is a Open Source software in the category Education developed by Nico Stuurman.

The latest version of Micro-Manager is 1.1, released on 02/18/2008. It was initially added to our database on 08/24/2007.

Micro-Manager runs on the following operating systems: Windows.

Micro-Manager has not been rated by our users yet.

Pros

  • Open-source software, allowing for customization and community contribution
  • Designed for microscope control and image acquisition, making it a powerful tool for scientific research
  • Supports a wide range of hardware devices from numerous manufacturers
  • Offers extensive scripting capabilities for automation and advanced control

Cons

  • Steep learning curve for new users due to complexity and extensive features
  • User interface can be overwhelming and not very user-friendly for beginners
  • May require some technical expertise to troubleshoot issues or customize certain features

FAQ

What is Micro-Manager?

Micro-Manager is an open-source software for controlling microscopes and other scientific imaging equipment.

Who developed Micro-Manager?

Micro-Manager was developed by a team led by Nico Stuurman at the University of California, San Francisco.

What features does Micro-Manager offer?

Micro-Manager offers a range of features including real-time control of motorized stages, filter wheels, cameras, and other devices, as well as image acquisition, time-lapse imaging, and automated multi-dimensional acquisition.

Is Micro-Manager free to use?

Yes, Micro-Manager is released under an open-source license and is free to use, modify, and distribute.

What types of microscopes are compatible with Micro-Manager?

Micro-Manager is compatible with a wide range of microscopes including fluorescence microscopes, confocal microscopes, spinning disk systems, and many others.

Can I control non-imaging equipment using Micro-Manager?

Yes, Micro-Manager is designed to control not only imaging devices but also various non-imaging equipment such as motorized stages and filter wheels.

What operating systems does Micro-Manager support?

Micro-Manager is supported on Windows, macOS, and Linux operating systems.

Can I write custom plugins for Micro-Manager?

Yes, Micro-Manager has a plugin architecture that allows users to develop custom plugins to extend its functionality.

Is there a community or forum for Micro-Manager users?

Yes, Micro-Manager has an active user community and a dedicated forum where users can ask questions, share experiences, and get support.

Where can I download Micro-Manager?

Micro-Manager can be downloaded from the official website: https://micro-manager.org


Pete Milner

Pete Milner

I'm Pete, a software reviewer at UpdateStar with a passion for the ever-evolving world of technology. My background in engineering gives me a unique insight into the intricacies of software, allowing me to provide in-depth, knowledgeable reviews and analyses. Whether it's the newest software releases, tech innovations, or the latest trends, I'm here to break it all down for you. I work from UpdateStar’s Berlin main office.

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